recipe bioconductor-watermelon

Illumina 450 methylation array normalization and metrics

Homepage

https://bioconductor.org/packages/3.13/bioc/html/wateRmelon.html

License

GPL-3

Recipe

/bioconductor-watermelon/meta.yaml

Links

biotools: watermelon

15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.

package bioconductor-watermelon

Versions

1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0

Depends

• bioconductor-biobase >=2.52.0,<2.53.0

• bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0

• bioconductor-illuminaio >=0.34.0,<0.35.0

• bioconductor-limma >=3.48.0,<3.49.0

• bioconductor-lumi >=2.44.0,<2.45.0

• bioconductor-methylumi >=2.38.0,<2.39.0

• bioconductor-roc >=1.68.0,<1.69.0

• r-base >=4.1,<4.2.0a0

• r-matrixstats

Required By

• bioconductor-bigmelon

• bioconductor-champ

• bioconductor-meat

• bioconductor-skewr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-watermelon

and update with:

conda update bioconductor-watermelon

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-watermelon:<tag>

(see bioconductor-watermelon/tags for valid values for <tag>)

Download stats

Link to this page

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