-
recipe
bioconductor-watermelon
¶ Illumina 450 methylation array normalization and metrics
- Homepage
https://bioconductor.org/packages/3.10/bioc/html/wateRmelon.html
- License
GPL-3
- Recipe
- Links
biotools: watermelon
15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.
-
package
bioconductor-watermelon
¶ -
- Versions
1.30.0-0, 1.28.0-1, 1.26.0-0, 1.24.0-0, 1.22.0-0
- Depends
bioconductor-biobase >=2.46.0,<2.47.0
bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0
bioconductor-illuminaio >=0.28.0,<0.29.0
bioconductor-limma >=3.42.0,<3.43.0
bioconductor-lumi >=2.38.0,<2.39.0
bioconductor-methylumi >=2.32.0,<2.33.0
bioconductor-roc >=1.62.0,<1.63.0
r-base >=3.6,<3.7.0a0
- Required By
Installation
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install bioconductor-watermelon
and update with:
conda update bioconductor-watermelon
or use the docker container:
docker pull quay.io/biocontainers/bioconductor-watermelon:<tag>
(see bioconductor-watermelon/tags for valid values for
<tag>
)
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/bioconductor-watermelon/README.html)