recipe bioconductor-watermelon

Illumina 450 and EPIC methylation array normalization and metrics

Homepage

https://bioconductor.org/packages/3.14/bioc/html/wateRmelon.html

License

GPL-3

Recipe

/bioconductor-watermelon/meta.yaml

Links

biotools: watermelon

15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.

package bioconductor-watermelon

Versions

2.0.0-1,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0,  1.24.0-0, 

2.0.0-1,  1.36.0-0,  1.34.0-1,  1.34.0-0,  1.32.0-0,  1.30.0-0,  1.28.0-1,  1.26.0-0,  1.24.0-0,  1.22.0-0

Depends

• bioconductor-biobase >=2.54.0,<2.55.0

• bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0

• bioconductor-illuminaio >=0.36.0,<0.37.0

• bioconductor-limma >=3.50.0,<3.51.0

• bioconductor-lumi >=2.46.0,<2.47.0

• bioconductor-methylumi >=2.40.0,<2.41.0

• bioconductor-roc >=1.70.0,<1.71.0

• r-base >=4.1,<4.2.0a0

• r-matrixstats

Required By

• bioconductor-bigmelon

• bioconductor-meat

• bioconductor-skewr

• bioconductor-champ

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-watermelon

and update with:

conda update bioconductor-watermelon

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-watermelon:<tag>

(see bioconductor-watermelon/tags for valid values for <tag>)

Download stats

Link to this page

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