recipe bioconductor-watermelon

Illumina 450 methylation array normalization and metrics

Homepage

https://bioconductor.org/packages/3.11/bioc/html/wateRmelon.html

License

GPL-3

Recipe

/bioconductor-watermelon/meta.yaml

Links

biotools: watermelon

15 flavours of betas and three performance metrics, with methods for objects produced by methylumi and minfi packages.

package bioconductor-watermelon

Versions

1.32.0-0, 1.30.0-0, 1.28.0-1, 1.26.0-0, 1.24.0-0, 1.22.0-0

Depends

• bioconductor-biobase >=2.48.0,<2.49.0

• bioconductor-illuminahumanmethylation450kanno.ilmn12.hg19 >=0.6.0,<0.7.0

• bioconductor-illuminaio >=0.30.0,<0.31.0

• bioconductor-limma >=3.44.0,<3.45.0

• bioconductor-lumi >=2.40.0,<2.41.0

• bioconductor-methylumi >=2.34.0,<2.35.0

• bioconductor-roc >=1.64.0,<1.65.0

• r-base >=4.0,<4.1.0a0

• r-matrixstats

Required By

• bioconductor-meat

• bioconductor-bigmelon

• bioconductor-champ

• bioconductor-skewr

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bioconductor-watermelon

and update with:

conda update bioconductor-watermelon

or use the docker container:

docker pull quay.io/biocontainers/bioconductor-watermelon:<tag>

(see bioconductor-watermelon/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-watermelon/README.html)