recipe bioconductor-webbioc

Bioconductor Web Interface

Homepage:

https://bioconductor.org/packages/3.18/bioc/html/webbioc.html

License:

GPL (>= 2)

Recipe:

/bioconductor-webbioc/meta.yaml

Links:

biotools: webbioc, doi: 10.1007/0-387-29362-0_18

An integrated web interface for doing microarray analysis using several of the Bioconductor packages. It is intended to be deployed as a centralized bioinformatics resource for use by many users. (Currently only Affymetrix oligonucleotide analysis is supported.)

package bioconductor-webbioc

(downloads) docker_bioconductor-webbioc

versions:
1.74.0-0,  1.72.0-0,  1.70.0-0,  1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.60.0-0,  1.58.0-0, 

1.74.0-0,  1.72.0-0,  1.70.0-0,  1.66.0-0,  1.64.0-0,  1.62.0-1,  1.62.0-0,  1.60.0-0,  1.58.0-0,  1.56.0-1,  1.54.0-0,  1.52.0-0,  1.50.0-0

depends bioconductor-affy:

>=1.80.0,<1.81.0

depends bioconductor-annaffy:

>=1.74.0,<1.75.0

depends bioconductor-biobase:

>=2.62.0,<2.63.0

depends bioconductor-gcrma:

>=2.74.0,<2.75.0

depends bioconductor-multtest:

>=2.58.0,<2.59.0

depends bioconductor-qvalue:

>=2.34.0,<2.35.0

depends bioconductor-vsn:

>=3.70.0,<3.71.0

depends r-base:

>=4.3,<4.4.0a0

depends r-biocmanager:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bioconductor-webbioc

and update with::

   mamba update bioconductor-webbioc

To create a new environment, run:

mamba create --name myenvname bioconductor-webbioc

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bioconductor-webbioc:<tag>

(see `bioconductor-webbioc/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bioconductor-webbioc/README.html)