recipe bismark

Bismark is a program to map bisulfite treated sequencing reads to a genome of interest and perform methylation calls in a single step. The output can be easily imported into a genome viewer, such as SeqMonk, and enables a researcher to analyse the methylation levels of their samples straight away.

Homepage

https://www.bioinformatics.babraham.ac.uk/projects/bismark/

License

GPL3 / GNU General Public License v3 (GPLv3)

Recipe

/bismark/meta.yaml

Links

biotools: bismark

package bismark

(downloads) docker_bismark

Versions

0.22.1-0, 0.22.0-0, 0.21.0-0, 0.20.0-0, 0.19.1-0, 0.19.0-1, 0.19.0-0, 0.18.1-0, 0.17.0-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bismark

and update with:

conda update bismark

or use the docker container:

docker pull quay.io/biocontainers/bismark:<tag>

(see bismark/tags for valid values for <tag>)