recipe bloocoo

Bloocoo is a k-mer spectrum-based read error corrector, designed to correct large datasets with a very low memory footprint. As an example, it can correct whole human genome re-sequencing reads at 70 x coverage with less than 4GB of memory.

Homepage:

http://gatb.inria.fr/software/bloocoo/

License:

aGPL v3

Recipe:

/bloocoo/meta.yaml

package bloocoo

(downloads) docker_bloocoo

versions:

1.0.7-7,  1.0.7-6,  1.0.7-5,  1.0.7-4,  1.0.7-3,  1.0.7-2,  1.0.7-1,  1.0.7-0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends zlib:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bloocoo

and update with::

   mamba update bloocoo

To create a new environment, run:

mamba create --name myenvname bloocoo

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bloocoo:<tag>

(see `bloocoo/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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