recipe bold-identification

A tool for taxonomic assignment for given sequences using the BOLD database (http://www.boldsystems.org/index.php)

Homepage:

https://github.com/linzhi2013/bold_identification

License:

GPL3 / GNU General Public v3 or later (GPLv3+)

Recipe:

/bold-identification/meta.yaml

Links:

biotools: bold-identification

package bold-identification

(downloads) docker_bold-identification

versions:

0.0.27-0,  0.0.25-0

depends beautifulsoup4:

depends biopython:

>1.5

depends html5lib:

depends python:

>=3.5

depends requests:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bold-identification

and update with::

   mamba update bold-identification

To create a new environment, run:

mamba create --name myenvname bold-identification

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bold-identification:<tag>

(see `bold-identification/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bold-identification/README.html)