Package Recipe 'bowtie2'

recipe bowtie2¶

Fast and sensitive read alignment

Homepage: http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
License: GPLv3
Recipe: /bowtie2/meta.yaml
Links: biotools: bowtie2, doi: 10.1038/nmeth.1923, debian: bowtie2

package bowtie2¶

Versions

2.4.1-0, 2.3.5.1-0, 2.3.5-0, 2.3.4.3-1, 2.3.4.3-0, 2.3.4.2-0, 2.3.4.1-1, 2.3.4.1-0, 2.3.4-0, 2.3.3.1-0, 2.3.2-1, 2.3.0-1, 2.3.0-0, 2.2.8-2, 2.2.8-1, 2.2.8-0, 2.2.7-1, 2.2.7-0, 2.2.6-0, 2.2.5-6, 2.2.5-5, 2.2.5-4, 2.2.5-3, 2.2.5-2, 2.2.5-1, 2.2.4-6, 2.2.4-5, 2.2.4-4, 2.2.4-3, 2.2.4-2, 2.2.4-1, 2.2.4-0, 2.2.1-3, 2.2.1-2, 2.2.1-1, 2.2.1-0

Depends

libgcc-ng >=7.3.0
libstdcxx-ng >=7.3.0
perl
python >=3.8,<3.9.0a0
tbb >=2019.9
zlib >=1.2.11,<1.3.0a0

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bowtie2

and update with:

conda update bowtie2

or use the docker container:

docker pull quay.io/biocontainers/bowtie2:<tag>

(see bowtie2/tags for valid values for <tag>)

Link to this page¶

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bowtie2/README.html)