recipe bowtie2

Fast and sensitive read alignment

Homepage

http://bowtie-bio.sourceforge.net/bowtie2/index.shtml

License

GPLv3

Recipe

/bowtie2/meta.yaml

Links

biotools: bowtie2, doi: 10.1038/nmeth.1923, debian: bowtie2

package bowtie2

(downloads) docker_bowtie2

Versions

2.3.5-0, 2.3.4.3-1, 2.3.4.3-0, 2.3.4.2-0, 2.3.4.1-1, 2.3.4.1-0, 2.3.4-0, 2.3.3.1-0, 2.3.2-1, 2.3.0-1, 2.3.0-0, 2.2.8-2, 2.2.8-1, 2.2.8-0, 2.2.7-1, 2.2.7-0, 2.2.6-0, 2.2.5-5, 2.2.5-4, 2.2.5-3, 2.2.5-2, 2.2.5-1, 2.2.4-5, 2.2.4-4, 2.2.4-3, 2.2.4-2, 2.2.4-1, 2.2.4-0, 2.2.1-2, 2.2.1-1, 2.2.1-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bowtie2

and update with:

conda update bowtie2

or use the docker container:

docker pull quay.io/biocontainers/bowtie2:<tag>

(see bowtie2/tags for valid values for <tag>)