recipe bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

Homepage:

https://github.com/jenniferlu717/Bracken

License:

GPL-3.0

Recipe:

/bracken/meta.yaml

Links:

biotools: Bracken, doi: 10.7717/peerj-cs.104

package bracken

Versions:

2.8-0,  2.7-0,  2.6.2-0,  2.6.1-3,  2.6.1-2,  2.6.1-1,  2.6.1-0,  2.6.0-2,  2.6.0-1, 

2.8-0,  2.7-0,  2.6.2-0,  2.6.1-3,  2.6.1-2,  2.6.1-1,  2.6.1-0,  2.6.0-2,  2.6.0-1,  2.6.0-0,  2.5.3-0,  2.5.2-0,  2.5-2,  2.5-1,  2.5-0,  2.2-1,  2.2-0,  1.0.0-1,  1.0.0-0

Depends:

• _openmp_mutex >=4.5

• kraken2

• libgcc-ng >=12

• libstdcxx-ng >=12

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

Required By:

• aquamis

• quantpi

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install bracken

and update with:

conda update bracken

or use the docker container:

docker pull quay.io/biocontainers/bracken:<tag>

(see bracken/tags for valid values for <tag>)

Download stats

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