recipe bracken

Bracken (Bayesian Reestimation of Abundance with KrakEN) is a highly accurate statistical method that computes the abundance of species in DNA sequences from a metagenomics sample.

Homepage

https://github.com/jenniferlu717/Bracken

License

GPL-3.0

Recipe

/bracken/meta.yaml

Links

biotools: Bracken, doi: 10.7717/peerj-cs.104

package bracken

Versions

2.6.0-2,  2.6.0-1,  2.6.0-0,  2.5.3-0,  2.5.2-0,  2.5-2,  2.5-1,  2.5-0,  2.2-1, 

2.6.0-2,  2.6.0-1,  2.6.0-0,  2.5.3-0,  2.5.2-0,  2.5-2,  2.5-1,  2.5-0,  2.2-1,  2.2-0,  1.0.0-1,  1.0.0-0

Depends

• kraken2

• libgcc-ng >=7.5.0

• libstdcxx-ng >=7.5.0

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install bracken

and update with:

conda update bracken

or use the docker container:

docker pull quay.io/biocontainers/bracken:<tag>

(see bracken/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/bracken/README.html)