BRAKER2 is an extension of BRAKER1
Other / Artistic License
BRAKER2 is an extension of BRAKER1 which allows for fully automated training of the gene prediction tools GeneMark-EX and AUGUSTUS from RNA-Seq and/or protein homology information, and that integrates the extrinsic evidence from RNA-Seq and protein homology information into the prediction.
- Required By
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install braker2
and update with:
conda update braker2
or use the docker container:
docker pull quay.io/biocontainers/braker2:<tag>
(see braker2/tags for valid values for
GeneMark software can be used for free, but requires a license file and should be additionally installed on the machine where the BRAKER2 environment is.
ProtHint software can be used for free, but doesn't allow redistribution and should be additionally installed on the machine where the BRAKER2 environment is.