recipe breakseq2

BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants.

Homepage

http://bioinform.github.io/breakseq2

License

BSD-2-Clause

Recipe

/breakseq2/meta.yaml

package breakseq2

(downloads) docker_breakseq2

Versions

2.2-2, 2.2-1, 2.2-0

Depends biopython

1.65

Depends bwa

Depends cython

Depends pysam

0.7.7

Depends python

>=2.7,<2.8.0a0

Depends samtools

0.1.19

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install breakseq2

and update with:

conda update breakseq2

or use the docker container:

docker pull quay.io/biocontainers/breakseq2:<tag>

(see breakseq2/tags for valid values for <tag>)