recipe bs_call

DNA methylation and variant Caller for Bisulfite Sequencing Data.

Homepage:

https://github.com/heathsc/bs_call

License:

GPL-3.0

Recipe:

/bs_call/meta.yaml

Links:

doi: 10.1101/201988

package bs_call

versions:

2.02-8,  2.02-7,  2.02-6,  2.02-5,  2.02-4,  2.02-3,  2.02-2,  2.02-1,  2.02-0

depends bzip2:

>=1.0.8,<2.0a0

depends gsl:

>=2.7,<2.8.0a0

depends libgcc-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends openmp:

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install bs_call

and update with::

   mamba update bs_call

To create a new environment, run:

mamba create --name myenvname bs_call

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/bs_call:<tag>

(see `bs_call/tags`_ for valid values for ``<tag>``)

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Link to this page

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