recipe btllib

Bioinformatics common code library in C++ with Python wrappers, from Bioinformatics Technology Lab

Homepage:

https://github.com/bcgsc/btllib

Documentation:

https://bcgsc.github.io/btllib/

License:

GPL3 / GPL-3.0-or-later

Recipe:

/btllib/meta.yaml

Links:

doi: 10.21105/joss.04720, doi: 10.1093/bioadv/vbad162

package btllib

versions:

1.7.3-1,  1.7.3-0,  1.7.2-3,  1.7.2-2,  1.7.2-1,  1.7.2-0,  1.7.1-0,  1.7.0-0,  1.6.2-0, 

1.7.3-1,  1.7.3-0,  1.7.2-3,  1.7.2-2,  1.7.2-1,  1.7.2-0,  1.7.1-0,  1.7.0-0,  1.6.2-0,  1.6.1-0,  1.6.0-1,  1.6.0-0,  1.5.1-1,  1.5.1-0,  1.5.0-0,  1.4.10-0,  1.4.8-0,  1.4.4-0,  1.4.3-2,  1.4.3-1,  1.4.3-0

depends _openmp_mutex:

>=4.5

depends bzip2:

depends gzip:

depends libgcc:

>=13

depends libgomp:

depends libstdcxx:

>=13

depends lrzip:

depends pigz:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends samtools:

>=1.21,<2.0a0

depends tar:

depends wget:

depends xz:

depends zip:

requirements:

additional platforms:

linux-aarch64,  osx-arm64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install btllib

and update with::

   mamba update btllib

To create a new environment, run:

mamba create --name myenvname btllib

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/btllib:<tag>

(see `btllib/tags`_ for valid values for ``<tag>``)

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