recipe cadd-scripts

CADD scripts release for offline scoring

Homepage:

https://github.com/kircherlab/CADD-scripts

License:

Restricted. Free for non-commercial users.

Recipe:

/cadd-scripts/meta.yaml

This package contains the CADD-scripts. Please note that the "CADD.sh" script is available as "cadd.sh" while the "install.sh" script is available as "cadd-install.sh".

The "Prerequisite" steps from the CADD-scripts repository README can be skipped as you already have conda installed with the proper channels if you can install this package and this package depends on the proper Snakemake version.

package cadd-scripts

(downloads) docker_cadd-scripts

versions:

1.7.2-0,  1.7.1-0,  1.7-0,  1.6.post1-0,  1.6-1,  1.6-0

depends snakemake:

>=4.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cadd-scripts

and update with::

   mamba update cadd-scripts

To create a new environment, run:

mamba create --name myenvname cadd-scripts

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cadd-scripts:<tag>

(see `cadd-scripts/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cadd-scripts/README.html)