recipe cd-hit

Clusters and compares protein or nucleotide sequences

Homepage:

https://github.com/weizhongli/cdhit

License:

GPLv2

Recipe:

/cd-hit/meta.yaml

package cd-hit

Versions:

4.8.1-9,  4.8.1-8,  4.8.1-7,  4.8.1-6,  4.8.1-5,  4.8.1-4,  4.8.1-3,  4.8.1-2,  4.8.1-1, 

4.8.1-9,  4.8.1-8,  4.8.1-7,  4.8.1-6,  4.8.1-5,  4.8.1-4,  4.8.1-3,  4.8.1-2,  4.8.1-1,  4.8.1-0,  4.6.8-2,  4.6.8-1,  4.6.8-0,  4.6.6-0,  4.6.4-1,  4.6.4-0

Depends:

• _openmp_mutex >=4.5

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• zlib

Required By:

• hybran

• pifcosm

• ariba

• graph2pro-var

• ggcaller

• galru

• seroba

• pipelign

• zol

• repeatmodeler

• panaroo

• provean

• genericrepeatfinder

• motulizer

• roary

• dadaist2-full

• goblin

• msi

• lotus2

• genview

• bactopia

• cdhit-reader

• ltr_retriever

• m-party

• phylofisher

• pirate

• edta

• ddocent

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install cd-hit

and update with:

conda update cd-hit

or use the docker container:

docker pull quay.io/biocontainers/cd-hit:<tag>

(see cd-hit/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cd-hit/README.html)