recipe cdna_cupcake

cDNA_Cupcake is a miscellaneous collection of Python and R scripts used for analyzing sequencing data.

Homepage:

https://github.com/Magdoll/cDNA_Cupcake

License:

BSD / BSD-3-Clause-Clear

Recipe:

/cdna_cupcake/meta.yaml

package cdna_cupcake

Versions:

29.0.0-0,  28.0.0-1,  28.0.0-0,  22.0.0-1,  22.0.0-0,  19.0.0-0,  18.1.0-0,  18.0.0-0,  17.0.0-0, 

29.0.0-0,  28.0.0-1,  28.0.0-0,  22.0.0-1,  22.0.0-0,  19.0.0-0,  18.1.0-0,  18.0.0-0,  17.0.0-0,  16.0.0-0,  15.1.0-0,  14.2.0-0,  14.0.0-0,  13.0.0-0,  12.5-0,  12.4.0-1,  12.4.0-0,  12.3.0-0,  12.1.0-1,  12.1.0-0,  12.0.0-0,  11.0.0-0,  10.0.1-0,  9.1.1-0,  9.0.3-0,  8.7.3-0,  5.8-0,  5.3-1,  5.3-0

Depends:

• bcbio-gff

• biopython

• bx-python >=0.7.3

• graphviz

• libgcc-ng >=12

• numpy >=1.21.6,<2.0a0

• pysam

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• r-base

• samtools >=1.10

• scikit-learn

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install cdna_cupcake

and update with:

conda update cdna_cupcake

or use the docker container:

docker pull quay.io/biocontainers/cdna_cupcake:<tag>

(see cdna_cupcake/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cdna_cupcake/README.html)