recipe centrifuge

Classifier for metagenomic sequences. Supports classifier scripts

Homepage:

https://github.com/DaehwanKimLab/centrifuge

License:

GPL3 / GPL-3.0-only

Recipe:

/centrifuge/meta.yaml

Links:

biotools: Centrifuge, doi: 10.1101/gr.210641.116

package centrifuge

versions:

1.0.4.2-1,  1.0.4.2-0,  1.0.4.1-2,  1.0.4.1-1,  1.0.4.1-0,  1.0.4-0,  1.0.4_beta-6,  1.0.4_beta-5,  1.0.4_beta-4, 

1.0.4.2-1,  1.0.4.2-0,  1.0.4.1-2,  1.0.4.1-1,  1.0.4.1-0,  1.0.4-0,  1.0.4_beta-6,  1.0.4_beta-5,  1.0.4_beta-4,  1.0.4_beta-3,  1.0.4_beta-2,  1.0.4_beta-0,  1.0.3-3,  1.0.3-2,  1.0.3-1,  1.0.3-0

depends libgcc:

>=13

depends libstdcxx:

>=13

depends libzlib:

>=1.3.1,<2.0a0

depends perl:

depends python:

depends tar:

depends wget:

depends zlib:

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install centrifuge

and update with::

   mamba update centrifuge

To create a new environment, run:

mamba create --name myenvname centrifuge

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/centrifuge:<tag>

(see `centrifuge/tags`_ for valid values for ``<tag>``)

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