recipe centrifuge

Classifier for metagenomic sequences.

Homepage:

https://github.com/DaehwanKimLab/centrifuge

License:

GPL3

Recipe:

/centrifuge/meta.yaml

Links:

biotools: Centrifuge, doi: 10.1101/gr.210641.116

package centrifuge

Versions:

1.0.4-0,  1.0.4_beta-6,  1.0.4_beta-5,  1.0.4_beta-4,  1.0.4_beta-3,  1.0.4_beta-2,  1.0.4_beta-0,  1.0.3-3,  1.0.3-2, 

1.0.4-0,  1.0.4_beta-6,  1.0.4_beta-5,  1.0.4_beta-4,  1.0.4_beta-3,  1.0.4_beta-2,  1.0.4_beta-0,  1.0.3-3,  1.0.3-2,  1.0.3-1,  1.0.3-0

Depends:

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.12,<1.3.0a0

• perl

• python <3

• tar

• wget

• zlib >=1.2.12,<1.3.0a0

Required By:

• nullarbor

• ctat-metagenomics

• plascope

• anvio

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install centrifuge

and update with:

conda update centrifuge

or use the docker container:

docker pull quay.io/biocontainers/centrifuge:<tag>

(see centrifuge/tags for valid values for <tag>)

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