recipe centrifuge

Classifier for metagenomic sequences.

Homepage

https://github.com/infphilo/centrifuge

License

GPL3

Recipe

/centrifuge/meta.yaml

Links

biotools: Centrifuge, doi: 10.1101/gr.210641.116

package centrifuge

Versions

1.0.4_beta-2, 1.0.4_beta-0, 1.0.3-3, 1.0.3-2, 1.0.3-1, 1.0.3-0

Depends

• libstdcxx-ng >=4.9

• perl >=5.26.2,<5.27.0a0

• python >=2.7,<2.8.0a0

• zlib >=1.2.11,<1.3.0a0

Required By

• ctat-metagenomics

• plascope

• nullarbor

• anvio

• drep

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install centrifuge

and update with:

conda update centrifuge

or use the docker container:

docker pull quay.io/biocontainers/centrifuge:<tag>

(see centrifuge/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/centrifuge/README.html)