recipe centrifuge

Classifier for metagenomic sequences.

Homepage

https://github.com/infphilo/centrifuge

License

GPL3

Recipe

/centrifuge/meta.yaml

Links

biotools: Centrifuge, doi: 10.1101/gr.210641.116

package centrifuge

Versions

1.0.4_beta-5,  1.0.4_beta-4,  1.0.4_beta-3,  1.0.4_beta-2,  1.0.4_beta-0,  1.0.3-3,  1.0.3-2,  1.0.3-1,  1.0.3-0

Depends

• libgcc-ng >=7.3.0

• libstdcxx-ng >=7.3.0

• perl

• python <3

• tar

• wget

• zlib >=1.2.11,<1.3.0a0

Required By

• nullarbor

• plascope

• ctat-metagenomics

• drep

• anvio

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install centrifuge

and update with:

conda update centrifuge

or use the docker container:

docker pull quay.io/biocontainers/centrifuge:<tag>

(see centrifuge/tags for valid values for <tag>)

Link to this page

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