recipe chorus2

A pipeline to select oligonucleotides for fluorescence in situ hbridization (Oligo-FISH).

Homepage

https://github.com/zhangtaolab/Chorus2

Documentation

https://chorus2.readthedocs.io/en/dev/

License

MIT license

Recipe

/chorus2/meta.yaml

Links

biotools: chorus2

package chorus2

(downloads) docker_chorus2

Versions

2.0-4, 2.0-3, 2.0-2, 2.0-1, 2.0-0

Depends bwa

<=0.7.8

Depends bwa

>=0.7.3a

Depends cython

Depends jellyfish

>=2.2.3

Depends matplotlib

>=3

Depends numpy

Depends pandas

Depends primer3-py

>=0.4.2

Depends pybigwig

Depends pyfasta

Depends pyqt

<5.11

Depends python

>=3

Depends sip

>=4

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install chorus2

and update with:

conda update chorus2

or use the docker container:

docker pull quay.io/biocontainers/chorus2:<tag>

(see chorus2/tags for valid values for <tag>)