- recipe chorus2
A pipeline to select oligonucleotides for fluorescence in situ hbridization (Oligo-FISH).
- Homepage:
- Documentation:
- License:
MIT license
- Recipe:
- Links:
biotools: chorus2
- package chorus2¶
- versions:
2.01-2,2.01-1,2.01-0,2.0.1-0,2.0-5,2.0-4,2.0-3,2.0-2,2.0-1,2.01-2,2.01-1,2.01-0,2.0.1-0,2.0-5,2.0-4,2.0-3,2.0-2,2.0-1,2.0-0- depends bcftools:
- depends bwa:
>=0.7.3a,<=0.7.8- depends kmer-jellyfish:
2.*- depends matplotlib-base:
>=3- depends numpy:
- depends pandas:
- depends primer3-py:
>=0.4.2- depends pybedtools:
- depends pybigwig:
- depends pyfasta:
- depends pyqt:
<5.11- depends python:
>=3.9,<3.10.0a0- depends python_abi:
3.9.* *_cp39- depends samtools:
- depends sip:
>=4- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install chorus2 and update with:: mamba update chorus2
To create a new environment, run:
mamba create --name myenvname chorus2
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/chorus2:<tag> (see `chorus2/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
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[](http://bioconda.github.io/recipes/chorus2/README.html)
