recipe chromhmm

ChromHMM is software for learning and characterizing chromatin states. ChromHMM can integrate multiple chromatin datasets such as ChIP-seq data of various histone modifications to discover de novo the major re-occuring combinatorial and spatial patterns of marks.

Homepage:

https://github.com/jernst98/ChromHMM

License:

GPLv3

Recipe:

/chromhmm/meta.yaml

Links:

biotools: chromhmm

package chromhmm

(downloads) docker_chromhmm

Versions:
1.23-01.21-11.21-01.20-11.20-01.19-01.15-01.14-01.12-0

1.23-01.21-11.21-01.20-11.20-01.19-01.15-01.14-01.12-01.11-0

Depends:
Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install chromhmm

and update with:

conda update chromhmm

or use the docker container:

docker pull quay.io/biocontainers/chromhmm:<tag>

(see chromhmm/tags for valid values for <tag>)

Notes

ChromHMM comes with about 36MB of example data which is not included in the recipe. This recipe installs a script, "download_chromhmm_data.sh", which downloads the data in the proper location, and which can be run after ChromHMM has been installed.

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