recipe circlator

circlator: a tool to circularise genome assemblies

Homepage

https://github.com/sanger-pathogens/circlator

License

GPL / GNU General Public License v3 (GPLv3)

Recipe

/circlator/meta.yaml

package circlator

(downloads) docker_circlator

Versions

1.5.5-3, 1.5.5-2, 1.5.5-1, 1.5.5-0, 1.5.2-1, 1.5.2-0, 1.5.1-0, 1.5.0-0, 1.4.0-0, 1.3.1-0, 1.3.0-0, 1.1.2-0

Depends amos

>=3.1.0

Depends bio_assembly_refinement

>=0.4.0

Depends bwa

Depends canu

>=1.8

Depends mummer

>=3.23

Depends openpyxl

Depends prodigal

Depends pyfastaq

>=3.12.1

Depends pymummer

>=0.9.0

Depends pysam

>=0.8.1

Depends python

>=3

Depends samtools

Depends spades

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install circlator

and update with:

conda update circlator

or use the docker container:

docker pull quay.io/biocontainers/circlator:<tag>

(see circlator/tags for valid values for <tag>)