recipe clever-toolkit

The CLEVER Toolkit

Homepage:

https://bitbucket.org/tobiasmarschall/clever-toolkit

License:

GPL3

Recipe:

/clever-toolkit/meta.yaml

CTK is a suite of tools to analyze next-generation sequencing data and, in particular, to discover and genotype insertions and deletions from paired-end reads.

package clever-toolkit

Versions:

2.4-12,  2.4-11,  2.4-10,  2.4-9,  2.4-8,  2.4-7,  2.4-6,  2.4-5,  2.4-0, 

2.4-12,  2.4-11,  2.4-10,  2.4-9,  2.4-8,  2.4-7,  2.4-6,  2.4-5,  2.4-0,  2.3-0,  2.2.1-0,  2.1-3,  2.0rc4-3,  2.0rc4-2,  2.0rc3-1,  2.0rc3-0

Depends:

• bedtools

• bwa

• libgcc-ng >=12

• libstdcxx-ng >=12

• libzlib >=1.2.13,<1.3.0a0

• matplotlib-base

• python 3.*

• samtools

Required By:

• daisysuite

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install clever-toolkit

and update with:

conda update clever-toolkit

or use the docker container:

docker pull quay.io/biocontainers/clever-toolkit:<tag>

(see clever-toolkit/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

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