Clip&Merge is a tool to clip off adapters from sequencing reads and merge overlapping paired end reads together.
With an activated Bioconda channel (see 2. Set up channels), install with:
conda install clipandmerge
and update with:
conda update clipandmerge
or use the docker container:
docker pull quay.io/biocontainers/clipandmerge:<tag>
(see clipandmerge/tags for valid values for