clove

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CLOVE: Classification of genomic fusions into structural variation events.

Home https://github.com/PapenfussLab/clove
Versions 0.17
License GPL-2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/clove

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install clove

and update with:

conda update clove

Notes

Clove is a Java program that comes with a custom wrapper shell script. This shell wrapper is called “clove” and is on $PATH by default. By default “-Xms512m -Xmx1g” is set in the wrapper. If you want to overwrite it you can specify these values directly after your binaries. If you have _JAVA_OPTIONS set globally this will take precedence. For example run it with “clove -Xms512m -Xmx1g”

docker

A Docker container is available at https://quay.io/repository/biocontainers/clove.