recipe clsify

Haplotyping of C. Liberibacter solanacearum from Sanger data.






package clsify

(downloads) docker_clsify



depends attrs:

depends bcftools:

depends bioconvert:

depends blast:

depends cattrs:

depends dash:

depends dash-bootstrap-components:

depends dash-core-components:

depends dash-html-components:

depends dash-renderer:

depends dash-table:

depends flask:

depends logzero:

depends numpy:

depends pandas:

depends plotly:

depends pysam:

depends python:


depends requests:

depends vcfpy:

depends xlsxwriter:



You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install clsify

and update with::

   mamba update clsify

To create a new environment, run:

mamba create --name myenvname clsify

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull<tag>

(see `clsify/tags`_ for valid values for ``<tag>``)

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