cnvkit

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Copy number variant detection from high-throughput sequencing

Home https://github.com/etal/cnvkit
Versions 0.7.10, 0.7.11, 0.7.3, 0.7.4, 0.7.5, 0.7.6, 0.7.7, 0.7.8, 0.7.9, 0.8.0, 0.8.1, 0.8.2, 0.8.3a0, 0.8.4, 0.8.5, 0.8.5dev0, 0.8.6a0, 0.9.0, 0.9.1, 0.9.1a0, 0.9.2, 0.9.2a0, 0.9.3
License Apache License 2.0
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/cnvkit

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cnvkit

and update with:

conda update cnvkit

docker

A Docker container is available at https://quay.io/repository/biocontainers/cnvkit.