recipe cnvkit

Copy number variant detection from high-throughput sequencing

Homepage

https://github.com/etal/cnvkit

License

Apache License 2.0

Recipe

/cnvkit/meta.yaml

Links

biotools: cnvkit, doi: 10.1371/journal.pcbi.1004873

package cnvkit

(downloads) docker_cnvkit

Versions

0.9.6a0-2, 0.9.6a0-1, 0.9.6a0-0, 0.9.5-1, 0.9.5-0, 0.9.4a0-0, 0.9.3-2, 0.9.2-2, 0.9.2a0-2, 0.9.2a0-1, 0.9.2a0-0, 0.9.1-0, 0.9.1a0-0, 0.9.0-0, 0.8.6a0-2, 0.8.6a0-1, 0.8.6a0-0, 0.8.5-0, 0.8.5dev0-1, 0.8.5dev0-0, 0.8.4-0, 0.8.3a0-1, 0.8.3a0-0, 0.8.2-0, 0.8.1-0, 0.8.0-0, 0.7.11-0, 0.7.10-1, 0.7.10-0, 0.7.9-0, 0.7.8-1, 0.7.8-0, 0.7.7-0, 0.7.6-0, 0.7.5-0, 0.7.4-1, 0.7.4-0, 0.7.3-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install cnvkit

and update with:

conda update cnvkit

or use the docker container:

docker pull quay.io/biocontainers/cnvkit:<tag>

(see cnvkit/tags for valid values for <tag>)