recipe cnvnator

Tool for calling copy number variations.

Homepage:

https://github.com/abyzovlab/CNVnator

License:

MIT

Recipe:

/cnvnator/meta.yaml

package cnvnator

versions:

0.4.1-9,  0.4.1-8,  0.4.1-7,  0.4.1-6,  0.4.1-5,  0.4.1-4,  0.4.1-3,  0.4.1-2,  0.4.1-1, 

0.4.1-9,  0.4.1-8,  0.4.1-7,  0.4.1-6,  0.4.1-5,  0.4.1-4,  0.4.1-3,  0.4.1-2,  0.4.1-1,  0.4.1-0

depends _openmp_mutex:

>=4.5

depends htslib:

>=1.20,<1.22.0a0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends libzlib:

>=1.2.13,<2.0a0

depends matplotlib-base:

depends ncurses:

>=6.5,<7.0a0

depends numpy:

depends perl-getopt-long:

depends python:

>=3.11,<3.12.0a0

depends root_base:

>=6.30.2,<6.30.3.0a0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install cnvnator

and update with::

   mamba update cnvnator

To create a new environment, run:

mamba create --name myenvname cnvnator

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/cnvnator:<tag>

(see `cnvnator/tags`_ for valid values for ``<tag>``)

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Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/cnvnator/README.html)