- recipe comparative-annotation-toolkit
A straightforward end-to-end pipeline that takes as input a HAL-format multiple whole genome alignment as well as a GFF3 file representing annotations on one high quality assembly in the HAL alignment, and produces a output GFF3 annotation on all target genomes chosen
- Homepage:
https://github.com/ComparativeGenomicsToolkit/Comparative-Annotation-Toolkit
- License:
APACHE / Apache 2.0
- Recipe:
- Links:
doi: 10.1101/231118
- package comparative-annotation-toolkit¶
-
- Versions:
0.1-2
,0.1-1
,0.1-0
- Depends:
- Required By:
Installation
With an activated Bioconda channel (see set-up-channels), install with:
conda install comparative-annotation-toolkit
and update with:
conda update comparative-annotation-toolkit
or use the docker container:
docker pull quay.io/biocontainers/comparative-annotation-toolkit:<tag>
(see comparative-annotation-toolkit/tags for valid values for
<tag>
)
Download stats¶
Link to this page¶
Render an badge with the following MarkDown:
[](http://bioconda.github.io/recipes/comparative-annotation-toolkit/README.html)