recipe confindr

Detect intra- and inter-species bacterial contamination in NGS reads

Homepage

https://github.com/OLC-Bioinformatics/ConFindr

Documentation

https://OLC-Bioinformatics.github.io/ConFindr/

License

MIT / MIT

Recipe

/confindr/meta.yaml

package confindr

(downloads) docker_confindr

Versions
0.7.3-00.7.2-00.7.1-00.7.0-10.7.0-00.6.0-00.5.1-00.5.0-00.4.8-0

0.7.3-00.7.2-00.7.1-00.7.0-10.7.0-00.6.0-00.5.1-00.5.0-00.4.8-00.4.7-00.4.6-00.4.5-00.4.4-00.4.3-00.4.2-00.4.1-00.4.0-00.3.4-00.3.3-00.3.2-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install confindr

and update with:

conda update confindr

or use the docker container:

docker pull quay.io/biocontainers/confindr:<tag>

(see confindr/tags for valid values for <tag>)