recipe connor

A command-line tool to deduplicate bam files based on custom, inline barcoding.

Homepage

https://github.com/umich-brcf-bioinf/Connor

License

Apache / Apache-2.0

Recipe

/connor/meta.yaml

package connor

(downloads) docker_connor

Versions

0.6.1-0, 0.6-2, 0.6-0, 0.5.1-0

Depends cython

Depends pysam

>0.8.3,<=0.12

Depends python

Depends sortedcontainers

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install connor

and update with:

conda update connor

or use the docker container:

docker pull quay.io/biocontainers/connor:<tag>

(see connor/tags for valid values for <tag>)