recipe constax

A software for accurate taxonomic classification of environmental DNA markers

Homepage:

https://github.com/liberjul/CONSTAXv2

Documentation:

https://constax.readthedocs.io/en/latest/

License:

MIT

Recipe:

/constax/meta.yaml

package constax

(downloads) docker_constax

versions:
2.0.20-0,  2.0.19-0,  2.0.18-0,  2.0.17-0,  2.0.16-0,  2.0.15-0,  2.0.14-0,  2.0.13-0,  2.0.12-0, 

2.0.20-0,  2.0.19-0,  2.0.18-0,  2.0.17-0,  2.0.16-0,  2.0.15-0,  2.0.14-0,  2.0.13-0,  2.0.12-0,  2.0.11-0,  2.0.10-0,  2.0.9-0,  2.0.8-1,  2.0.8-0,  2.0.7-2,  2.0.7-0,  2.0.6-0,  2.0.5-1,  2.0.5-0,  2.0.4-1,  2.0.4-0,  2.0.3-0,  2.0.1-0,  2.0.0-0

depends blast:

depends numpy:

depends pandas:

depends python:

>=3.6

depends rdptools:

depends vsearch:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install constax

and update with::

   mamba update constax

To create a new environment, run:

mamba create --name myenvname constax

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/constax:<tag>

(see `constax/tags`_ for valid values for ``<tag>``)

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Link to this page

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