control-freec

downloads

Copy number and genotype annotation from whole genome and whole exome sequencing data.

Home https://github.com/BoevaLab/FREEC
Versions 10.5, 10.6
License GPL (>=2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/control-freec

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install control-freec

and update with:

conda update control-freec

Notes

The tool will be available as freec in the command line. See the homepage for example config files. Auxiliary scripts like e.g. freec2bed.pl and freec2circos.pl (see homepage) are available in the command line as well.

docker

A Docker container is available at https://quay.io/repository/biocontainers/control-freec.