control-freec

downloads

Copy number and genotype annotation from whole genome and whole exome sequencing data.

Home https://github.com/BoevaLab/FREEC
Versions 10.5, 10.6
License GPL (>=2)
Recipe https://github.com/bioconda/bioconda-recipes/tree/master/recipes/control-freec

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install control-freec

and update with:

conda update control-freec

Notes

The tool will be available as `freec` in the command line. See the homepage for example config files. Auxiliary scripts like e.g. freec2bed.pl and freec2circos.pl (see homepage) are available in the command line as well.

docker

A Docker container is available at https://quay.io/repository/biocontainers/control-freec.