recipe control-freec

Copy number and genotype annotation from whole genome and whole exome sequencing data.

Homepage

https://github.com/BoevaLab/FREEC

License

GPL (>=2)

Recipe

/control-freec/meta.yaml

Links

biotools: freec

package control-freec

(downloads) docker_control-freec

Versions

11.6-0, 11.5-1, 11.5-0, 11.4-0, 10.6-0, 10.5-0

Depends
Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install control-freec

and update with:

conda update control-freec

or use the docker container:

docker pull quay.io/biocontainers/control-freec:<tag>

(see control-freec/tags for valid values for <tag>)

Notes

The tool will be available as `freec` in the command line. See the homepage for example config files. Auxiliary scripts like e.g. freec2bed.pl and freec2circos.pl (see homepage) are available in the command line as well.