recipe coprarna

Target prediction for prokaryotic trans-acting small RNAs

Homepage:

https://github.com/PatrickRWright/CopraRNA

License:

MIT

Recipe:

/coprarna/meta.yaml

package coprarna

Versions:

2.1.4-0,  2.1.3-9,  2.1.3-8,  2.1.3-7,  2.1.3-6,  2.1.3-5,  2.1.3-4,  2.1.3-3,  2.1.3-2, 

2.1.4-0,  2.1.3-9,  2.1.3-8,  2.1.3-7,  2.1.3-6,  2.1.3-5,  2.1.3-4,  2.1.3-3,  2.1.3-2,  2.1.3-1,  2.1.3-0,  2.1.2-0,  2.1.1-0,  2.1.0-0

Depends:

• blast-legacy

• bzip2

• clustalo

• coreutils

• domclust

• embassy-phylip

• emboss

• gawk

• grep

• intarna >2.2,<3

• mafft

• perl <6

• perl-bio-eutilities

• perl-bioperl

• perl-getopt-long

• perl-list-moreutils

• perl-parallel-forkmanager

• phantomjs

• python

• r-base <4

• r-pheatmap

• r-robustrankaggreg

• r-seqinr

• sed

• suds-jurko

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install coprarna

and update with:

conda update coprarna

or use the docker container:

docker pull quay.io/biocontainers/coprarna:<tag>

(see coprarna/tags for valid values for <tag>)

Download stats

Link to this page

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