recipe coprarna

Target prediction for prokaryotic trans-acting small RNAs

Homepage:

https://github.com/PatrickRWright/CopraRNA

License:

MIT

Recipe:

/coprarna/meta.yaml

package coprarna

versions:

2.1.4-0,  2.1.3-9,  2.1.3-8,  2.1.3-7,  2.1.3-6,  2.1.3-5,  2.1.3-4,  2.1.3-3,  2.1.3-2, 

2.1.4-0,  2.1.3-9,  2.1.3-8,  2.1.3-7,  2.1.3-6,  2.1.3-5,  2.1.3-4,  2.1.3-3,  2.1.3-2,  2.1.3-1,  2.1.3-0,  2.1.2-0,  2.1.1-0,  2.1.0-0

depends blast-legacy:

depends bzip2:

depends clustalo:

depends coreutils:

depends domclust:

depends embassy-phylip:

depends emboss:

depends gawk:

depends grep:

depends intarna:

>2.2,<3

depends mafft:

depends perl:

<6

depends perl-bio-eutilities:

depends perl-bioperl:

depends perl-getopt-long:

depends perl-list-moreutils:

depends perl-parallel-forkmanager:

depends phantomjs:

depends python:

depends r-base:

<4

depends r-pheatmap:

depends r-robustrankaggreg:

depends r-seqinr:

depends sed:

depends suds-jurko:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install coprarna

and update with::

   mamba update coprarna

To create a new environment, run:

mamba create --name myenvname coprarna

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/coprarna:<tag>

(see `coprarna/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/coprarna/README.html)