recipe crispresso

A software pipeline for the analysis of targeted CRISPR-Cas9 sequencing data

Homepage

https://github.com/lucapinello/CRISPResso

License

GPLv3

Recipe

/crispresso/meta.yaml

package crispresso

(downloads) docker_crispresso

Versions

1.0.13-2, 1.0.13-1, 1.0.8-0, 1.0.7-0, 1.0.6-0, 1.0-0

Depends argparse

Depends biopython

>=1.6.5

Depends bowtie2

Depends emboss

Depends flash

Depends libgcc-ng

>=7.3.0

Depends matplotlib

>=1.3.1

Depends mock

Depends nose

Depends numpy

>=1.10.4

Depends openjdk

>=8

Depends pandas

>=0.16

Depends python

>=2.7,<2.8.0a0

Depends samtools

Depends seaborn

Depends trimmomatic

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install crispresso

and update with:

conda update crispresso

or use the docker container:

docker pull quay.io/biocontainers/crispresso:<tag>

(see crispresso/tags for valid values for <tag>)