recipe crispresso2

A software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments

Homepage:

https://github.com/pinellolab/CRISPResso2

License:

Partners

Recipe:

/crispresso2/meta.yaml

package crispresso2

versions:

2.3.1-3,  2.3.1-2,  2.3.1-1,  2.3.1-0,  2.3.0-1,  2.3.0-0,  2.2.14-0,  2.2.13-0,  2.2.12-1, 

2.3.1-3,  2.3.1-2,  2.3.1-1,  2.3.1-0,  2.3.0-1,  2.3.0-0,  2.2.14-0,  2.2.13-0,  2.2.12-1,  2.2.12-0,  2.2.11-0,  2.2.10-2,  2.2.10-1,  2.2.10-0,  2.2.9-1,  2.2.9-0,  2.2.8-0,  2.2.7-1,  2.2.7-0,  2.2.6-1,  2.2.6-0,  2.2.5-0,  2.2.4-0,  2.2.3-0,  2.2.2-0,  2.2.0-0,  2.1.3-0,  2.1.2-0,  2.1.1-0,  2.1.0-1,  2.1.0-0,  2.0.45-1,  2.0.45-0,  2.0.44-0,  2.0.43-0,  2.0.42-0,  2.0.40-0,  2.0.39-0,  2.0.38-0,  2.0.32-0,  2.0.31-0,  2.0.30-0,  2.0.29-0,  2.0.28-0,  2.0.27-3,  2.0.23-1,  2.0.23-0

depends bowtie2:

depends fastp:

depends jinja2:

depends libgcc-ng:

>=12

depends matplotlib-base:

<=3.8.4

depends numpy:

<=1.26.4

depends numpy:

>=1.22.4,<2.0a0

depends pandas:

depends plotly:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends samtools:

depends scipy:

depends seaborn-base:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install crispresso2

and update with::

   mamba update crispresso2

To create a new environment, run:

mamba create --name myenvname crispresso2

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/crispresso2:<tag>

(see `crispresso2/tags`_ for valid values for ``<tag>``)

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