recipe crispresso2

A software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments

Homepage

https://github.com/pinellolab/CRISPResso2

License

Partners

Recipe

/crispresso2/meta.yaml

package crispresso2

Versions

2.0.27-3, 2.0.23-1, 2.0.23-0

Depends

• argparse

• biopython >=1.6.5

• bowtie2

• flash

• jinja2

• matplotlib >=1.3.1

• networkx 2.2.*

• numpy >=1.9

• pandas >=0.15

• python >=2.7,<2.8.0a0

• samtools

• scipy 1.1.0.*

• seaborn 0.7.1.*

• trimmomatic

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install crispresso2

and update with:

conda update crispresso2

or use the docker container:

docker pull quay.io/biocontainers/crispresso2:<tag>

(see crispresso2/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/crispresso2/README.html)