recipe crispresso2

A software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments

Homepage

https://github.com/pinellolab/CRISPResso2

License

Partners

Recipe

/crispresso2/meta.yaml

package crispresso2

Versions

2.0.32-0, 2.0.31-0, 2.0.30-0, 2.0.29-0, 2.0.28-0, 2.0.27-3, 2.0.23-1, 2.0.23-0

Depends

• argparse

• biopython >=1.6.5

• bowtie2

• flash

• jinja2

• libgcc-ng >=7.3.0

• matplotlib-base >=1.3.1

• networkx 2.2.*

• numpy >=1.9

• pandas >=0.15,<=0.24

• python >=2.7,<2.8.0a0

• samtools

• scipy 1.1.0.*

• seaborn 0.7.1.*

• trimmomatic

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install crispresso2

and update with:

conda update crispresso2

or use the docker container:

docker pull quay.io/biocontainers/crispresso2:<tag>

(see crispresso2/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

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