recipe crispresso2

A software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments

Homepage

https://github.com/pinellolab/CRISPResso2

License

Partners

Recipe

/crispresso2/meta.yaml

package crispresso2

(downloads) docker_crispresso2

Versions

2.0.29-0, 2.0.28-0, 2.0.27-3, 2.0.23-1, 2.0.23-0

Depends argparse

Depends biopython

>=1.6.5

Depends bowtie2

Depends flash

Depends jinja2

Depends libgcc-ng

>=7.3.0

Depends matplotlib

>=1.3.1

Depends networkx

2.2.*

Depends numpy

>=1.9

Depends pandas

>=0.15

Depends python

>=2.7,<2.8.0a0

Depends samtools

Depends scipy

1.1.0.*

Depends seaborn

0.7.1.*

Depends trimmomatic

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install crispresso2

and update with:

conda update crispresso2

or use the docker container:

docker pull quay.io/biocontainers/crispresso2:<tag>

(see crispresso2/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/crispresso2/README.html)