recipe crispresso2

A software pipeline designed to enable rapid and intuitive interpretation of genome editing experiments

Homepage

https://github.com/pinellolab/CRISPResso2

License

Partners

Recipe

/crispresso2/meta.yaml

package crispresso2

Versions

2.1.2-0,  2.1.1-0,  2.1.0-1,  2.1.0-0,  2.0.45-1,  2.0.45-0,  2.0.44-0,  2.0.43-0,  2.0.42-0, 

2.1.2-0,  2.1.1-0,  2.1.0-1,  2.1.0-0,  2.0.45-1,  2.0.45-0,  2.0.44-0,  2.0.43-0,  2.0.42-0,  2.0.40-0,  2.0.39-0,  2.0.38-0,  2.0.32-0,  2.0.31-0,  2.0.30-0,  2.0.29-0,  2.0.28-0,  2.0.27-3,  2.0.23-1,  2.0.23-0

Depends

• argparse >=1.3,<=1.4

• bowtie2

• flash

• jinja2 2.10

• libgcc-ng >=9.3.0

• matplotlib-base >=1.3.1,<=2.2.3

• numpy >=1.9,<=1.16.6

• pandas >=0.15,<=0.24

• python >=2.7,<2.8.0a0

• python_abi 2.7.* *_cp27mu

• samtools

• scipy 1.1.0.*

• seaborn >0.7.1,<0.10

• trimmomatic

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install crispresso2

and update with:

conda update crispresso2

or use the docker container:

docker pull quay.io/biocontainers/crispresso2:<tag>

(see crispresso2/tags for valid values for <tag>)

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/crispresso2/README.html)