recipe cutadapt

Trim adapters from high-throughput sequencing reads

Homepage:

https://cutadapt.readthedocs.io/

License:

MIT

Recipe:

/cutadapt/meta.yaml

Links:

biotools: cutadapt, doi: 10.14806/ej.17.1.200

package cutadapt

Versions:

4.4-1,  4.4-0,  4.3-0,  4.2-0,  4.1-1,  4.1-0,  4.0-0,  3.7-1,  3.7-0, 

4.4-1,  4.4-0,  4.3-0,  4.2-0,  4.1-1,  4.1-0,  4.0-0,  3.7-1,  3.7-0,  3.6-0,  3.5-1,  3.5-0,  3.4-1,  3.4-0,  3.3-1,  3.3-0,  3.2-0,  3.1-0,  3.0-0,  2.10-1,  2.10-0,  2.9-0,  2.8-0,  2.7-0,  2.6-0,  2.5-0,  2.4-0,  2.3-0,  2.2-0,  2.1-0,  2.0-0,  1.18-1,  1.18-0,  1.17-0,  1.16-2,  1.16-1,  1.16-0,  1.15-0,  1.14-0,  1.13-0,  1.12-1,  1.12-0,  1.11-0,  1.10-0,  1.9.1-0,  1.8.3-0,  1.8.1-0

Depends:

• dnaio >=0.10.0

• libgcc-ng >=12

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• xopen >=1.6.0

Required By:

• msi

• igdiscover

• libis

• r-dimsum

• crisprlungo

• methylpy

• cutqc

• capc-map

• anospp-analysis

• optimir

• mirge

• trim-galore

• icount

• ipyrad

• mageck-vispr

• mirge3

• sqt

• ctseq

• metaplex

• shortstack

• minute

• icount-mini

• dadaist2

• bioexcel_seqqc

• crabs

• thapbi-pict

• apscale

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install cutadapt

and update with:

conda update cutadapt

or use the docker container:

docker pull quay.io/biocontainers/cutadapt:<tag>

(see cutadapt/tags for valid values for <tag>)

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