recipe dadaist2-full

Meta-package for Dadaist2 with full R packages, VSEARCH, CD-HIT and MultiQC

Homepage:

License:

The license for this meta-package is MIT; individual tools vary

Recipe:

/dadaist2-full/meta.yaml

package dadaist2-full

versions:

2.0-0,  1.1-0,  1.0-0,  0.7-1,  0.7-0

depends cd-hit:

depends dadaist2:

>=1.1

depends itsxpress:

depends multiqc:

depends r-ade4:

depends r-base:

>=4

depends r-cluster:

depends r-corrplot:

depends r-fpc:

depends r-hmisc:

depends r-optparse:

depends r-phangorn:

depends rich:

depends vsearch:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dadaist2-full

and update with::

   mamba update dadaist2-full

To create a new environment, run:

mamba create --name myenvname dadaist2-full

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dadaist2-full:<tag>

(see `dadaist2-full/tags`_ for valid values for ``<tag>``)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/dadaist2-full/README.html)