recipe daisysuite

DaisySuite - mapping-based pipeline for horizontal gene transfer (HGT) detection using sequencing data

Homepage

https://gitlab.com/eseiler/DaisySuite

License

GNU GPLv3

Recipe

/daisysuite/meta.yaml

package daisysuite

(downloads) docker_daisysuite

Versions

1.3.0-0, 1.2.1-1, 1.2.1-0, 1.2.0-1, 1.2.0-0, 1.1.0-0, 1.0.0-0

Depends bedtools

2.22

Depends biopython

1.72

Depends bwa

0.7.12

Depends clever-toolkit

2.0rc3

Depends gustaf

1.0.8

Depends mason

2.0.7

Depends pandas

0.18.1

Depends pysam

0.9.1.4

Depends sak

0.4.6

Depends samtools

1.9

Depends scipy

1.1.0

Depends snakemake

3.9.0

Depends stellar

1.4.9

Depends yara

0.9.6

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install daisysuite

and update with:

conda update daisysuite

or use the docker container:

docker pull quay.io/biocontainers/daisysuite:<tag>

(see daisysuite/tags for valid values for <tag>)