recipe dbgraph

A graph-centric approach for metagenome-guided peptide identification in metaproteomics.

Homepage:

https://github.com/COL-IU/graph2pro-var/tree/master/Graph2Pro

License:

GNU General Public License

Recipe:

/dbgraph/meta.yaml

Includes program DBGraph2Pro and DBGraphPep2Pro. Creates a peptide and protein database from graph generated from nucleotide sequencing data using MEGAHIT or MetaSpades. A graph-centric approach for metagenome-guided peptide identification in metaproteomics.

package dbgraph

(downloads) docker_dbgraph

versions:

1.0.0-0,  v1.0.0-1

depends libgcc-ng:

>=7.3.0

depends libstdcxx-ng:

>=7.3.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dbgraph

and update with::

   mamba update dbgraph

To create a new environment, run:

mamba create --name myenvname dbgraph

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dbgraph:<tag>

(see `dbgraph/tags`_ for valid values for ``<tag>``)

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Link to this page

Render an install-with-bioconda badge with the following MarkDown:

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