recipe debwt

A efficient method to construct BWT index of a given DNA sequence, especially useful for gigantic and high similar genome. DeBWT has good scalability to construct BWT in parallel computing. It is well-suited to run on multiple core servers or clusters to construct the BWT of large collections of genome sequences.

Homepage:

https://github.com/DixianZhu/deBWT

License:

Unknown

Recipe:

/debwt/meta.yaml

package debwt

(downloads) docker_debwt

versions:

1.0.1-7,  1.0.1-6,  1.0.1-5,  1.0.1-4,  1.0.1-3,  1.0.1-2,  1.0.1-1,  1.0.1-0

depends libgcc-ng:

>=12

depends libzlib:

>=1.2.13,<1.3.0a0

depends zlib:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install debwt

and update with::

   mamba update debwt

To create a new environment, run:

mamba create --name myenvname debwt

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/debwt:<tag>

(see `debwt/tags`_ for valid values for ``<tag>``)

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Link to this page

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