recipe desman

De novo Extraction of Strains from MetAgeNomes

Homepage:

https://github.com/chrisquince/DESMAN

License:

BSD / BSD

Recipe:

/desman/meta.yaml

Links:

doi: 10.1186/s13059-017-1309-9

package desman

versions:

2.1-10,  2.1-9,  2.1-8,  2.1-7,  2.1-6,  2.1-4,  2.1-3,  2.1-2,  2.1-1, 

2.1-10,  2.1-9,  2.1-8,  2.1-7,  2.1-6,  2.1-4,  2.1-3,  2.1-2,  2.1-1,  2.1-0

depends bcbio-gff:

depends biopython:

depends cython:

>=0.19.1

depends gsl:

>=2.7,<2.8.0a0

depends numpy:

>=1.22.4,<2.0a0

depends pandas:

>=0.11.0

depends pysam:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends r-getopt:

depends r-ggplot2:

>=2.2.2

depends r-labeling:

depends r-reshape:

>=0.8.7

depends scikit-learn:

depends scipy:

>=0.12.0

depends setuptools:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install desman

and update with::

   mamba update desman

To create a new environment, run:

mamba create --name myenvname desman

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/desman:<tag>

(see `desman/tags`_ for valid values for ``<tag>``)

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