recipe desman

De novo Extraction of Strains from MetAgeNomes

Homepage:

https://github.com/chrisquince/DESMAN

License:

BSD / BSD

Recipe:

/desman/meta.yaml

Links:

doi: 10.1186/s13059-017-1309-9

package desman

Versions:

2.1-7,  2.1-6,  2.1-4,  2.1-3,  2.1-2,  2.1-1,  2.1-0

Depends:

• bcbio-gff

• biopython

• cython >=0.19.1

• gsl >=2.7,<2.8.0a0

• libgcc-ng >=12

• numpy >=1.21.6,<2.0a0

• pandas >=0.11.0

• pysam

• python >=3.10,<3.11.0a0

• python_abi 3.10.* *_cp310

• r-getopt

• r-ggplot2 >=2.2.2

• r-labeling

• r-reshape >=0.8.7

• scikit-learn

• scipy >=0.12.0

• setuptools

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install desman

and update with:

conda update desman

or use the docker container:

docker pull quay.io/biocontainers/desman:<tag>

(see desman/tags for valid values for <tag>)

Download stats

Link to this page

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