recipe desman

De novo Extraction of Strains from MetAgeNomes

Homepage

https://github.com/chrisquince/DESMAN

License

BSD / BSD

Recipe

/desman/meta.yaml

Links

doi: 10.1186/s13059-017-1309-9

package desman

Versions

2.1-3,  2.1-2,  2.1-1,  2.1-0

Depends

• bcbio-gff

• biopython

• cython >=0.19.1

• gsl >=2.6,<2.7.0a0

• libgcc-ng >=7.5.0

• numpy >=1.14.6,<2.0a0

• pandas >=0.11.0

• pysam

• python >=3.6,<3.7.0a0

• python_abi 3.6.* *_cp36m

• r-getopt

• r-ggplot2 >=2.2.2

• r-labeling

• r-reshape >=0.8.7

• scikit-learn

• scipy >=0.12.0

• setuptools

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install desman

and update with:

conda update desman

or use the docker container:

docker pull quay.io/biocontainers/desman:<tag>

(see desman/tags for valid values for <tag>)

Link to this page

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