recipe dinf

discriminator-based inference for population genetics

Homepage:

https://github.com/RacimoLab/dinf

License:

MIT

Recipe:

/dinf/meta.yaml

package dinf

versions:

0.5.0-0,  0.4.0-0,  0.3.0-0,  0.2.0-0

depends adjusttext:

depends cyvcf2:

>=0.30.14

depends demes:

>=0.2.1

depends demesdraw:

depends emcee:

depends flax:

>=0.5.2

depends jax:

depends matplotlib-base:

depends msprime:

>=1.0.4

depends multiprocess:

depends numpy:

depends optax:

depends python:

>=3.8

depends rich:

depends scipy:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dinf

and update with::

   mamba update dinf

To create a new environment, run:

mamba create --name myenvname dinf

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dinf:<tag>

(see `dinf/tags`_ for valid values for ``<tag>``)

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