recipe dinopy

DNA input and output library for Python and Cython. Includes reader and writer for FASTA and FASTQ files, support for samtools faidx files, and generators for solid and gapped q-grams (k-mers).

Homepage:

https://bitbucket.org/HenningTimm/dinopy

License:

MIT

Recipe:

/dinopy/meta.yaml

package dinopy

versions:

3.0.0-1,  3.0.0-0,  2.2.1-5,  2.2.1-3,  2.2.1-2,  2.2.1-0,  2.2.0-3,  2.2.0-2,  2.2.0-1, 

3.0.0-1,  3.0.0-0,  2.2.1-5,  2.2.1-3,  2.2.1-2,  2.2.1-0,  2.2.0-3,  2.2.0-2,  2.2.0-1,  2.2.0-0,  2.1.0-0,  2.0.3-0,  2.0.2-0,  2.0.1-1,  2.0.1-0,  2.0.0-1,  2.0.0-0,  1.2.1-0,  1.2.0-0

depends libgcc-ng:

>=12

depends libstdcxx-ng:

>=12

depends numpy:

1.21.*

depends numpy:

>=1.21.6,<2.0a0

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

requirements:

additional platforms:

linux-aarch64

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dinopy

and update with::

   mamba update dinopy

To create a new environment, run:

mamba create --name myenvname dinopy

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dinopy:<tag>

(see `dinopy/tags`_ for valid values for ``<tag>``)

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