recipe duet

SNP-Assisted Structural Variant Calling and Phasing Using Oxford Nanopore Sequencing

Homepage:

https://github.com/yekaizhou/duet

License:

BSD / BSD-3-Clause

Recipe:

/duet/meta.yaml

package duet

Versions:

0.6-0,  0.5-0,  0.4-0,  0.3-0,  0.2-0

Depends:

• bcftools 1.8.*

• clair3 0.1.12.*

• cutesv 2.0.2.*

• python 3.9.0.*

• sniffles 2.0.7.*

• svim 1.4.2.*

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install duet

and update with:

conda update duet

or use the docker container:

docker pull quay.io/biocontainers/duet:<tag>

(see duet/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/duet/README.html)