recipe dunovo

Du Novo: A pipeline for processing duplex sequencing data.

Homepage:

https://github.com/galaxyproject/dunovo

License:

GPL2

Recipe:

/dunovo/meta.yaml

package dunovo

versions:

3.0.2-1,  3.0.2-0,  2.16-0,  2.15-4,  2.15-3,  2.15-2,  2.15-1,  2.15-0,  2.14-0, 

3.0.2-1,  3.0.2-0,  2.16-0,  2.15-4,  2.15-3,  2.15-2,  2.15-1,  2.15-0,  2.14-0,  2.0.12-0,  2.0.9-0,  2.0.8-0,  2.0.6-0,  0.8.1-0,  0.7.6-1,  0.7.6-0,  0.7.5-0,  0.7.4-0,  0.7.1-0,  0.7-0

depends bash:

>=4.0.0

depends biopython:

1.78.*

depends bowtie:

>=1.3.0

depends coreutils:

depends file:

depends gawk:

depends gzip:

depends libgcc-ng:

>=10.3.0

depends mafft:

7.221.*

depends networkx:

2.4.*

depends python:

>=3.6

depends samtools:

1.9.*

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install dunovo

and update with::

   mamba update dunovo

To create a new environment, run:

mamba create --name myenvname dunovo

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/dunovo:<tag>

(see `dunovo/tags`_ for valid values for ``<tag>``)

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