- recipe duplex-tools
Duplex Tools contains a set of utilities for dealing with ONT Duplex sequencing data.
- Homepage:
- Documentation:
https://github.com/nanoporetech/duplex-tools/blob/v0.3.3/README.md
- License:
OTHER / MPL-2.0
- Recipe:
- package duplex-tools¶
- versions:
0.3.3-0,0.2.17-0,0.2.15-0,0.2.14-0,0.2.13-0,0.2.12-0,0.2.11-0,0.2.10-0,0.2.9-0,0.3.3-0,0.2.17-0,0.2.15-0,0.2.14-0,0.2.13-0,0.2.12-0,0.2.11-0,0.2.10-0,0.2.9-0,0.2.8-0,0.2.7-0- depends mappy:
- depends matplotlib-base:
- depends more-itertools:
- depends natsort:
- depends numpy:
- depends pandas:
- depends parasail-python:
- depends pod5:
- depends pyfastx:
>=0.9.0- depends pysam:
- depends python:
>=3.7- depends python-edlib:
- depends tqdm:
- requirements:
- additional platforms:
Installation
You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).
While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.
Given that you already have a conda environment in which you want to have this package, install with:
mamba install duplex-tools and update with:: mamba update duplex-tools
To create a new environment, run:
mamba create --name myenvname duplex-tools
with
myenvnamebeing a reasonable name for the environment (see e.g. the mamba docs for details and further options).Alternatively, use the docker container:
docker pull quay.io/biocontainers/duplex-tools:<tag> (see `duplex-tools/tags`_ for valid values for ``<tag>``)
Download stats¶
Link to this page¶
Render an 
badge with the following MarkDown:
[](http://bioconda.github.io/recipes/duplex-tools/README.html)
