recipe duplex-tools

Duplex Tools contains a set of utilities for dealing with ONT Duplex sequencing data

Homepage:

https://github.com/nanoporetech/duplex-tools

License:

MPL-2.0

Recipe:

/duplex-tools/meta.yaml

package duplex-tools

versions:

0.2.17-0,  0.2.15-0,  0.2.14-0,  0.2.13-0,  0.2.12-0,  0.2.11-0,  0.2.10-0,  0.2.9-0,  0.2.8-0, 

0.2.17-0,  0.2.15-0,  0.2.14-0,  0.2.13-0,  0.2.12-0,  0.2.11-0,  0.2.10-0,  0.2.9-0,  0.2.8-0,  0.2.7-0

depends more-itertools:

depends natsort:

depends numpy:

depends pandas:

depends parasail-python:

depends pathlib:

depends pyfastx:

depends pysam:

depends python:

depends python-edlib:

depends tqdm:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install duplex-tools

and update with::

   mamba update duplex-tools

To create a new environment, run:

mamba create --name myenvname duplex-tools

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/duplex-tools:<tag>

(see `duplex-tools/tags`_ for valid values for ``<tag>``)

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