recipe eggnog-mapper

Fast genome-wide functional annotation through orthology assignment.

Homepage:

https://github.com/eggnogdb/eggnog-mapper

Documentation:

https://github.com/eggnogdb/eggnog-mapper/wiki

License:

GPL / AGPL-3.0-only

Recipe:

/eggnog-mapper/meta.yaml

Links:

doi: 10.1093/nar/gky1085, usegalaxy-eu: eggnog_mapper

package eggnog-mapper

versions:

2.1.12-0,  2.1.11-0,  2.1.10-0,  2.1.9-0,  2.1.8-0,  2.1.7-0,  2.1.6-0,  2.1.5-0,  2.1.3-0, 

2.1.12-0,  2.1.11-0,  2.1.10-0,  2.1.9-0,  2.1.8-0,  2.1.7-0,  2.1.6-0,  2.1.5-0,  2.1.3-0,  2.1.2-0,  2.0.1-1,  2.0.1-0,  2.0.0-0,  1.0.3-3,  1.0.3-2,  1.0.3-1,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0.0-0

depends biopython:

>=1.76

depends diamond:

>=2.0.11

depends easel:

depends hmmer:

depends mmseqs2:

depends prodigal:

depends psutil:

>=5.7.0

depends python:

>=3.7

depends wget:

depends xlsxwriter:

>=1.4.3

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install eggnog-mapper

and update with::

   mamba update eggnog-mapper

To create a new environment, run:

mamba create --name myenvname eggnog-mapper

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/eggnog-mapper:<tag>

(see `eggnog-mapper/tags`_ for valid values for ``<tag>``)

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