recipe eggnog-mapper

Fast genome-wide functional annotation through orthology assignment.

Homepage:

https://github.com/eggnogdb/eggnog-mapper

Documentation:

https://github.com/eggnogdb/eggnog-mapper/wiki

License:

GPL / AGPL-3.0-only

Recipe:

/eggnog-mapper/meta.yaml

Links:

doi: 10.1093/nar/gky1085, usegalaxy-eu: eggnog_mapper

package eggnog-mapper

Versions:

2.1.10-0,  2.1.9-0,  2.1.8-0,  2.1.7-0,  2.1.6-0,  2.1.5-0,  2.1.3-0,  2.1.2-0,  2.0.1-1, 

2.1.10-0,  2.1.9-0,  2.1.8-0,  2.1.7-0,  2.1.6-0,  2.1.5-0,  2.1.3-0,  2.1.2-0,  2.0.1-1,  2.0.1-0,  2.0.0-0,  1.0.3-3,  1.0.3-2,  1.0.3-1,  1.0.3-0,  1.0.2-0,  1.0.1-0,  1.0.0-0

Depends:

• biopython >=1.76

• diamond >=2.0.11

• easel

• hmmer

• mmseqs2

• prodigal

• psutil >=5.7.0

• python >=3.7

• wget

• xlsxwriter >=1.4.3

Required By:

• mgca

• hybran

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install eggnog-mapper

and update with:

conda update eggnog-mapper

or use the docker container:

docker pull quay.io/biocontainers/eggnog-mapper:<tag>

(see eggnog-mapper/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/eggnog-mapper/README.html)