recipe elastic-blast

ElasticBLAST is a cloud-based tool to perform your BLAST searches faster and make you more effective.

Homepage:

https://github.com/ncbi/elastic-blast/

License:

PUBLIC-DOMAIN / Public Domain

Recipe:

/elastic-blast/meta.yaml

Links:

biotools: blast, doi: 10.1186/s12859-023-05245-9

package elastic-blast

versions:

1.3.1-0,  1.3.0-1,  1.3.0-0,  1.2.0-0,  1.1.0-1,  1.1.0-0,  1.0.0-0,  0.2.7-0,  0.2.6-0, 

1.3.1-0,  1.3.0-1,  1.3.0-0,  1.2.0-0,  1.1.0-1,  1.1.0-0,  1.0.0-0,  0.2.7-0,  0.2.6-0,  0.2.5-0,  0.2.4-0,  0.2.3-0,  0.2.2-0,  0.2.1-0,  0.2.0-0,  0.1.11-0,  0.1.10-0,  0.1.9-0,  0.1.8-0,  0.1.7-0,  0.1.6-0,  0.1.5-0,  0.1.4-0

depends awscli:

depends awslimitchecker:

depends boto3:

depends dataclasses-json:

depends google-cloud-sdk:

depends importlib-metadata:

depends importlib-resources:

6.1.1

depends kubernetes-client:

depends pex:

2.9.0

depends python:

>=3.7

depends tenacity:

requirements:

additional platforms:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install elastic-blast

and update with::

   mamba update elastic-blast

To create a new environment, run:

mamba create --name myenvname elastic-blast

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/elastic-blast:<tag>

(see `elastic-blast/tags`_ for valid values for ``<tag>``)

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