recipe emblmygff3

An efficient way to convert gff3 annotation files into EMBL format ready to submit.

Homepage:

https://github.com/NBISweden/EMBLmyGFF3

License:

GPL / GPLv3

Recipe:

/emblmygff3/meta.yaml

package emblmygff3

versions:

2.3-0,  2.2-1,  2.2-0,  2.1-0,  2-1,  2-0,  1.3-0

depends bcbio-gff:

>=0.6.4

depends biopython:

>=1.78

depends numpy:

>=1.22

depends python:

>=3.9.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install emblmygff3

and update with::

   mamba update emblmygff3

To create a new environment, run:

mamba create --name myenvname emblmygff3

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/emblmygff3:<tag>

(see `emblmygff3/tags`_ for valid values for ``<tag>``)

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