recipe ena-upload-cli

Command Line Interface to upload data to the European Nucleotide Archive

Homepage:

https://github.com/usegalaxy-eu/ena-upload-cli

License:

MIT / MIT

Recipe:

/ena-upload-cli/meta.yaml

package ena-upload-cli

(downloads) docker_ena-upload-cli

versions:
0.7.0-00.6.3-00.6.2-00.6.1-00.6.0-10.6.0-00.5.3-00.5.2-00.5.1-0

0.7.0-00.6.3-00.6.2-00.6.1-00.6.0-10.6.0-00.5.3-00.5.2-00.5.1-00.5.0-00.4.5-00.4.4-00.4.3-00.4.2-00.4.1-00.4.0-00.3.1-00.3.0-00.2.8-00.2.7-00.2.5-00.2.4-00.2.3-00.2.2-00.2.1-00.2.0-00.1.9-00.1.8-00.1.7-00.1.5-00.1.4-00.1.3-00.1.2-0

depends genshi:

0.7.*

depends jsonschema:

>=4.19.1

depends lxml:

>=4.9.3,<=5.0.0

depends openpyxl:

>=3.1.2,<=4.0.0

depends pandas:

>=2.0.3,<=3.0.0

depends pytest:

7.4.*

depends python:

>=3.7

depends pyyaml:

5.*

depends requests:

>=2.31.0,<=3.0.0

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install ena-upload-cli

and update with::

   mamba update ena-upload-cli

To create a new environment, run:

mamba create --name myenvname ena-upload-cli

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/ena-upload-cli:<tag>

(see `ena-upload-cli/tags`_ for valid values for ``<tag>``)

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