recipe expam

Metagenomic profiling using a reference phylogeny

Homepage:

https://github.com/seansolari/expam

Documentation:

https://expam.readthedocs.io/en/latest

License:

BSD / BSD-3-Clause

Recipe:

/expam/meta.yaml

package expam

versions:

1.4.0.5-0,  1.2.2.5-1,  1.2.2.5-0,  1.2.2.4-0,  1.2.2.3-0,  1.2.2.1-0,  1.2.2-0,  1.2.0-2,  1.2.0-1, 

1.4.0.5-0,  1.2.2.5-1,  1.2.2.5-0,  1.2.2.4-0,  1.2.2.3-0,  1.2.2.1-0,  1.2.2-0,  1.2.0-2,  1.2.0-1,  1.2.0-0,  1.1.3-0,  1.1.2-0,  1.1.1-0,  1.1.0-0,  1.0.5-0

depends ete3:

depends libgcc:

>=12

depends matplotlib-base:

depends multiprocess:

depends numpy:

>=1.21,<3

depends numpy:

>=1.22.0

depends pandas:

depends psutil:

depends pytables:

depends python:

>=3.10,<3.11.0a0

depends python_abi:

3.10.* *_cp310

depends requests:

requirements:

Installation

You need a conda-compatible package manager (currently either micromamba, mamba, or conda) and the Bioconda channel already activated (see set-up-channels).

While any of above package managers is fine, it is currently recommended to use either micromamba or mamba (see here for installation instructions). We will show all commands using mamba below, but the arguments are the same for the two others.

Given that you already have a conda environment in which you want to have this package, install with:

   mamba install expam

and update with::

   mamba update expam

To create a new environment, run:

mamba create --name myenvname expam

with myenvname being a reasonable name for the environment (see e.g. the mamba docs for details and further options).

Alternatively, use the docker container:

   docker pull quay.io/biocontainers/expam:<tag>

(see `expam/tags`_ for valid values for ``<tag>``)

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