recipe expansionhunter

A tool for estimating repeat sizes

Homepage

https://github.com/Illumina/ExpansionHunter

License

Apache / Apache v2.0

Recipe

/expansionhunter/meta.yaml

package expansionhunter

(downloads) docker_expansionhunter

Versions

3.0.0-0, 2.0.8-1, 2.0.8-0, 2.0.6-0

Depends boost

>=1.68.0,<1.68.1.0a0

Depends htslib

>=1.9,<1.10.0a0

Depends icu

>=58.2,<59.0a0

Depends libgcc-ng

>=7.3.0

Depends libstdcxx-ng

>=7.3.0

Depends zlib

>=1.2.11,<1.3.0a0

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install expansionhunter

and update with:

conda update expansionhunter

or use the docker container:

docker pull quay.io/biocontainers/expansionhunter:<tag>

(see expansionhunter/tags for valid values for <tag>)