recipe export2graphlan

Conversion software tool for annotating tree with GraPhlAn

Homepage:

https://github.com/segatalab/export2graphlan

License:

MIT / MIT License

Recipe:

/export2graphlan/meta.yaml

export2graphlan is a conversion software tool for producing both annotation and tree file for GraPhlAn. It automatically generate the input tree and the annotation file for GraPhlAn, starting from the input/output of MetaPhlAn, LEfSe, and HUMAnN. It supports also the biom file format. The annotation file will highlight specific sub-trees/clades automatically inferred from input file(s) provided. The two output file of export2graphlan should then be used with GraPhlAn.

package export2graphlan

Versions:

0.22-0,  0.20-0,  0.19-2,  0.19-1,  0.19-0

Depends:

• hclust2

• matplotlib-base

• numpy

• pandas

• python 2.7.*

• scipy

Required By:

Installation

With an activated Bioconda channel (see set-up-channels), install with:

conda install export2graphlan

and update with:

conda update export2graphlan

or use the docker container:

docker pull quay.io/biocontainers/export2graphlan:<tag>

(see export2graphlan/tags for valid values for <tag>)

Download stats

Link to this page

Render an badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/export2graphlan/README.html)