recipe export2graphlan

Conversion software tool for annotating tree with GraPhlAn

Homepage

https://github.com/segatalab/export2graphlan

License

MIT / MIT License

Recipe

/export2graphlan/meta.yaml

export2graphlan is a conversion software tool for producing both annotation and tree file for GraPhlAn. It automatically generate the input tree and the annotation file for GraPhlAn, starting from the input/output of MetaPhlAn, LEfSe, and HUMAnN. It supports also the biom file format. The annotation file will highlight specific sub-trees/clades automatically inferred from input file(s) provided. The two output file of export2graphlan should then be used with GraPhlAn.

package export2graphlan

Versions

0.22-0, 0.20-0, 0.19-2, 0.19-1, 0.19-0

Depends

• hclust2

• matplotlib-base

• numpy

• pandas

• python 2.7.*

• scipy

Required By

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install export2graphlan

and update with:

conda update export2graphlan

or use the docker container:

docker pull quay.io/biocontainers/export2graphlan:<tag>

(see export2graphlan/tags for valid values for <tag>)

Link to this page

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