recipe export2graphlan

export2graphlan is a conversion software tool for producing both annotation and tree file for GraPhlAn. It automatically generate the input tree and the annotation file for GraPhlAn, starting from the input/output of MetaPhlAn, LEfSe, and HUMAnN. It supports also the biom file format. The annotation file will highlight specific sub-trees/clades automatically inferred from input file(s) provided. The two output file of export2graphlan should then be used with GraPhlAn.

Homepage

https://bitbucket.org/CibioCM/export2graphlan/overview

License

MIT / MIT License

Recipe

/export2graphlan/meta.yaml

package export2graphlan

(downloads) docker_export2graphlan

Versions

0.20-0, 0.19-2, 0.19-1, 0.19-0

Depends hclust2

Depends libgcc

Depends matplotlib

Depends numpy

Depends pandas

Depends python

2.7*

Depends scipy

Requirements

Installation

With an activated Bioconda channel (see 2. Set up channels), install with:

conda install export2graphlan

and update with:

conda update export2graphlan

or use the docker container:

docker pull quay.io/biocontainers/export2graphlan:<tag>

(see export2graphlan/tags for valid values for <tag>)

Link to this page

Render an install-with-bioconda badge with the following MarkDown:

[![install with bioconda](https://img.shields.io/badge/install%20with-bioconda-brightgreen.svg?style=flat)](http://bioconda.github.io/recipes/export2graphlan/README.html)